SMTL ID : 1oyt.1

COMPLEX OF RECOMBINANT HUMAN THROMBIN WITH A DESIGNED FLUORINATED INHIBITOR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.67 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 2 residues within 4Å: Chain B: R.233, K.236 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:K.236, B:K.236 Water bridges: B:R.197, B:G.235, B:G.238

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 2 residues within 4Å: Chain B: K.174, T.177 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:K.174, B:T.177, H2O.4, H2O.5, H2O.6

1 x FSN: (3ASR,4RS,8ASR,8BRS)-4-(2-(4-FLUOROBENZYL)-1,3-DIOXODEACAHYDROPYRROLO[3,4-A] PYRROLIZIN-4-YL)BENZAMIDINE(Non-covalent)

FSN.3: 18 residues within 4Å: Chain B: H.43, Y.47, W.50, E.94, N.95, L.96, I.179, D.199, A.200, E.202, S.205, V.225, S.226, W.227, G.228, G.230, C.231, G.238 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:L.96, B:V.225, B:W.227, B:W.227 Hydrogen bonds: B:D.199, B:A.200, B:G.228, B:G.230

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Olsen, J.A. et al., A Fluorine Scan of Thrombin Inhibitors to Map the Fluorophilicity/Fluorophobicity of an Enzyme Active Site: Evidence for CF...C=O Interactions. Angew.Chem.Int.Ed.Engl. (2003)

Release Date

2003-06-24

Peptides

thrombin light chain: A
thrombin heavy chain: B
Hirudin IIB: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
I

thrombin light chain

thrombin heavy chain

Hirudin IIB

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