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SMTL ID : 1tbz.1

HUMAN THROMBIN WITH ACTIVE SITE N-METHYL-D PHENYLALANYL-N-[5-(AMINOIMINOMETHYL)AMINO]-1-{{BENZOTHIAZOLYL)CARBONYL] BUTYL]-L-PROLINAMIDE TRIFLUROACETATE AND EXOSITE-HIRUGEN

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x 00Q: D-phenylalanyl-N-{(1S)-1-[(S)-1,3-benzothiazol-2-yl(hydroxy)methyl]-4-carbamimidamidobutyl}-L-prolinamide(Covalent)

00Q.1:

20 residues within 4Å:

Chain B: H.43, Y.47, W.50, K.52, E.94, N.95, L.96, D.199, A.200, C.201, E.202, G.203, D.204, S.205, S.226, W.227, G.228, G.230, C.231, G.238

19 PLIP interactions:

19 interactions with chain B

Hydrophobic interactions: B:Y.47, B:W.50, B:L.96, B:W.227
Hydrogen bonds: B:A.200, B:C.201, B:E.202, B:G.203, B:S.205, B:S.226, B:G.228, B:G.228, B:G.230
Water bridges: B:W.227, B:G.230, B:Y.240
Salt bridges: B:D.199
pi-Stacking: B:H.43, B:W.50

2 x NA: SODIUM ION(Non-functional Binders)

NA.2:	4 residues within 4Å: Chain B: D.232, R.233, K.236, Y.237 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.236, B:K.236 Water bridges: B:D.232, B:G.238
NA.3:	2 residues within 4Å: Chain B: K.174, T.177 No protein-ligand interaction detected (PLIP)

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Matthews, J.H. et al., Crystal structures of thrombin with thiazole-containing inhibitors: probes of the S1' binding site. Biophys.J. (1996)

Release Date

1998-05-27

Peptides

ALPHA-THROMBIN: A
ALPHA-THROMBIN: B
HIRUGEN: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
I

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

ALPHA-THROMBIN

ALPHA-THROMBIN

HIRUGEN

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