SMTL ID : 2zhw.1

Exploring thrombin S3 pocket

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 2 residues within 4Å: Chain B: K.174, T.177 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.177 NA.2: 3 residues within 4Å: Chain B: D.232, R.233, K.236 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.233

1 x 12U: N-cycloheptylglycyl-N-(4-carbamimidoylbenzyl)-L-prolinamide(Non-covalent)

12U.3: 14 residues within 4Å: Chain B: H.43, Y.47, W.50, D.199, A.200, C.201, S.205, V.225, S.226, W.227, G.228, G.230, C.231, G.238 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:Y.47, B:V.225 Hydrogen bonds: B:D.199, B:A.200, B:S.205, B:S.226, B:G.228, B:G.228, B:G.230 Water bridges: B:F.239

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brandt, T. et al., Exploring thrombin S3 pocket. To be Published

Release Date

2009-02-10

Peptides

Thrombin light chain: A
Thrombin heavy chain: B
Hirudin variant-2: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
I

Thrombin light chain

Thrombin heavy chain

Hirudin variant-2

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